If HEP was lost at some point of the trip, it was most likely NOT because of the engines changing over to electric or vice versa. It was probably something to do with the battery in the C-3 car that you were in, or a bad connection on one of the HI-voltage cables. The DM's are AC powered so just like the M-7's, if the train hit's a gap on the third rail, the train does not lose power. The HVAC might stop for a few seconds, but the lights stay on. The transition from Electric to Diesel and vice versa is done without any notice to the pax. Upon exiting the tunnels, the engineer will have the locomotive start it's engine, the computer on the ICE will inform the engineer when the engine is ready to load, once it informs him, he turns the knob from Electric to diesel, and in a flip of a switch the engine is now diesel powered with the HEP never having to even stop for a few seconds. The same is done when changing over to electric. Also, the jerking feeling that you felt was when the DM's hit a gap on the third rail while operating in electric mode. For some reason, the speed drops sharply when the engine looses contact with the third rail, so you feel the train jerk as it looses speed and then picks it up as soon as it makes contact again. It's something similar to what Amtrak calls a GE moment with it's DM's gapping.
Also, the DE only operated on electric mode around the Harold area (eastbound trains)before changing over to Diesel, while they switched over to electric on westbounds before arriving at Jamaica. On Sunday, train 8061 was operating in excess of a 20 minute delay due to stuck brakes when having to reverse at Beth interlocking up the central Branch. Upon arrival at Jam, 8061 was canceled there, and pax were changed over to an electric for the remainder of the trip to Penn. The end result was that train 8066 originated at Jam with DM equipment with passengers changing over from an electric from Penn. Yep, things didn't run as smoothly as was expected, but we got it done. For those who missed it, next Sunday will have the same operations, so get your camera's ready.