"The term of this Agreement shall be from October 1, 2014 through September 30, 2016"
The article is referencing an old contract, so unless that EXACT agreement was extended, the claims in the article are invalid. I'm sure these terms were worked out before the service started because if not, the ticketed prices for both services (CTrail & Amtrak Shuttles) would not be the same. Amtrak would've kept the old pricing.
And if you want to use the old contract then these 2 sections can be referenced;
( c) The Section 209 Vermonter and the Section 209 Shuttles and Through Trains shall operate as Base-Increment NEC Corridor Trains as that term is defined in the Agreed 209 Methodology. As Base-Increment NEC Corridor Trains, the Section 209 Vermonter and the Section 209 Shuttles and Through Trains will make use of Amtrak-owned equipment and the costs of maintaining that equipment will be shared as called for in the Agreed 209 Methodology. Under normal operating conditions, Amtrak will operate train consists for the Section 209 Vermonter and the Section 209 Shuttles and Through Trains as specified in Appendix IA. In the event that one or more States provide their own equipment for use on the Section 209 Vermonter and/or the Section 209 Shuttles and Through Trains, Amtrak shall have the sole and exclusive right to approve or reject use of that equipment for the Section 209 Vermonter and/or Section 209 Shuttles and Through Trains. Amtrak agrees that it will not unreasonably delay, condition, or withhold said approval. CTDOT represents and warrants to Amtrak that any equipment provided by CTDOT will comply with all applicable laws and regulations, including the Americans with Disabilities Act. CTDOT shall also be responsible for obtaining the prior approval of the owner of any railroad(s) over which such equipment provided by CTDOT is to be operated. CTDOT may request that Amtrak increase or decrease the Service or the amount of Amtrak equipment used in the Service. Amtrak will review the request and provide CTDOT with the feasibility, and if feasible, a proposed implementation schedule where appropriate, and associated costs. Amtrak agrees that it will not unreasonably delay or withhold approval of the request.
(d) In the event that the Service may, from time to time, be fully utilized by the traveling public, the States may request that Amtrak provide additional rail passenger equipment to support the Service. Amtrak shall endeavor to provide additional rail passenger service equipment from its available resources commensurate with the funding requirements of the Agreed 209 Methodology. Except in an operational exigency, Amtrak will not modify the consist size set forth in Appendix IA without the States' prior written approval.
Im sure the state has already put in this request, because it seemed to be honored for about a month. The state also has enough cars/ engines at this moment to offer a trainset for Amtrak to use, which has been done in the past (last month) but as per the provided contract, Amtrak does have the right to deny use.
I'd say hold suggestions and comments until the current contract can be viewed.