I appreicate everyones input, But I have found out that signalling tone is called GE Star which was GE's version of Motorola's MDC signalling. I know the base stations lirr uses are in fact Motorolas but I think the trains are equipped with GE/Ericsson Orion radios.
What one looks like:
I am pretty sure I have seen that on the m7s but maybe someone here can confirm.
As for the pl tones I am already aware of them. The best reason for them is so a dispatcher listening on one base station won't hear other dispatchers at remote base stations with strong transmissions. Pl tones are channel gaurds used to prevent radios from hearing unwanted transmissions. The tones I posted are like what some of you said are signalling tones that send ids. If what tool is saying is true, that no one can see them, it would make sence because you would need dispatching consoles capable of decoding Ge star signalling while most are equipped to decode the more popular mdc 1200